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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945209.1_cds_XP_016487777.1_78477
CDS Infomation

[gene=LOC107807854] [db_xref=GeneID:107807854] [protein=probable auxin efflux carrier component 6] [protein_id=XP_016487777.1] [location=complement(join(14621..14687,15045..15121,16203..16360,16510..16595,27339..27546,29157..29410,29906..30265,30653..31077))] [gbkey=CDS]
Sequence

ATGATAGGTGCAAATGATTTTTACAAAGTAATGTGTGCAATGGTGCCTTTATACTTTGCT
ATGCTGGTGGCATATGGATCAGTGAAATGGTGGAAGATATTCTCGCCGGAGCAATGCTCC
GGCATCAACCGTTTTGTCGCCGTATTCGCCGTGCCAGTGTTGTCGTTCCACTTCATTTCT
CAGAACAATCCTTACCAAATGGACACAAAGTTCATATTGGCTGACACTTTGTCAAAGATT
ATTGTTCTTGTGATGCTGTCATTTTGGGCCATTTGTAAAGGGCAGTTGGATTGGCTCATC
ACCCTCTTCTCTGTCTCAACTTTGCCCAACACTTTGGTCATGGGCATTCCGCTGCTTAAT
GCCATGTATGGAGATTTCACTCAAAATCTCATGGTTCAGCTTGTTGTCCTTCAATGCATT
ATCTGGTATACTTTACTATTATTCCTGTTTGAATATAGAGCGGCCACTATATTAATTAAG
AATCAATATCCTGGCAATGCTGCTGCGGCCATAACCAAGTTCGAGATTGACAATGATGTT
ATCTCACTGGACGGCCGAAGCCCACTTTGTACGGAGTCGGAAGTCGACGGTAAAGGCCGT
ATCCGCGTCCGTATCCGGCGATCAACTTCATCAATGCCGGAGTCTGGGTTTTCATCCTCC
ATAGGAATCACACCAAGGGCATCTAATCTCTCCAATGCTGAAATCTTGTCTGTTCACACG
CCAACACCTTTACATGAATTCCGGAATGGAGATATCCCATTTGGACATGGAGATTTAAGA
GTCGGGATTCGTGCAGCAAGTCCTCGACTGTCCAGCTACGCATCATCGGACGCGTACTCG
CTGCAGCCGACGCCCAGGGCATCCAATTTCAATGAATTGGAGACGACCACTGTGACAACA
ACCGGGAATACGCCAATGTGGGTAATGTCTCCGGTGGCGGGGAAGGTGTTCCGGCAGCCA
TCTCCGTCTGCTAAAATGGCGTGGGAATCGCCAGGGAAGTGTCTACATGGAGACAGACAA
GGATACATAGATGTTGGAGAAAAGGAAATTAGCTTCAGAGATATCTCAAATTTTCCAATA
CAAGGAGGAGCTGCAGATTCAGCAAGTACCAATATTATTAAACAAGAAATGCCAAATGCT
TTTGTGATGCTAAGGCTCATTATAGTTATGGTTGGGAGAAAACTTTCACGTAATCCAAAT
ACTTACTCCAGTATATTAGGACTTCTCTGGTCTCTCATTTCTTTCAAATGGAATGTGGGG
ATGCCCAGTTTGGTGAAATATTCCATTAAAATAATTTCAGATGCAGGTCTTGGGATGGCC
ATGTTCAGTTTAGGGTTGTTCATGGCACTTCAACCTCGAATAATTGCGTGTGGCACGAAG
ATGGCAGCCATAGGAATGGCCATCAAATTTATAGGTGGACCTCTAGTAATGTCAGCTGCT
TCTGTTGTTGTTGGGCTTAGAGGAGTTCAACTTCACACTGCAATTGTACAGGCAGCTCTT
CCCCAAGGAATTGTTCCATTTGTCTTCGCAAGAGAATATGGATTGCATCCCGACATACTA
AGTACTGGGGTTATATTTGGGATGCTGGTTTCATTACCAGTAACCCTCCTTTATTATATA
CTTTTAGGGCTATGA

Peptide Sequence

PEP ID

XP_016487777.1
PEP Infomation

PREDICTED: probable auxin efflux carrier component 6 [Nicotiana tabacum]
Sequence

MIGANDFYKVMCAMVPLYFAMLVAYGSVKWWKIFSPEQCSGINRFVAVFAVPVLSFHFIS
QNNPYQMDTKFILADTLSKIIVLVMLSFWAICKGQLDWLITLFSVSTLPNTLVMGIPLLN
AMYGDFTQNLMVQLVVLQCIIWYTLLLFLFEYRAATILIKNQYPGNAAAAITKFEIDNDV
ISLDGRSPLCTESEVDGKGRIRVRIRRSTSSMPESGFSSSIGITPRASNLSNAEILSVHT
PTPLHEFRNGDIPFGHGDLRVGIRAASPRLSSYASSDAYSLQPTPRASNFNELETTTVTT
TGNTPMWVMSPVAGKVFRQPSPSAKMAWESPGKCLHGDRQGYIDVGEKEISFRDISNFPI
QGGAADSASTNIIKQEMPNAFVMLRLIIVMVGRKLSRNPNTYSSILGLLWSLISFKWNVG
MPSLVKYSIKIISDAGLGMAMFSLGLFMALQPRIIACGTKMAAIGMAIKFIGGPLVMSAA
SVVVGLRGVQLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPVTLLYYI
LLGL

Transcript Sequence

Gene sequence data has not been registered.